If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ), 'gf_id' => 'HOM05D000744', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000744' ), 'data_identifier' => 'HOM05D000744', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000744', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '785', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05560' => 'bna', 'A02p42910' => 'bna', 'A03p00100' => 'bna', 'A03p61570' => 'bna', 'A05p07660' => 'bna', 'A06p17430' => 'bna', 'A06p30260' => 'bna', 'A07p15150' => 'bna', 'A07p28160' => 'bna', 'A07p42590' => 'bna', 'A08p17920' => 'bna', 'A08p28990' => 'bna', 'Aa31LG1G17900' => 'aar', 'Aa31LG1G18240' => 'aar', 'Aa31LG1G23420' => 'aar', 'Aa31LG2G17200' => 'aar', 'Aa31LG5G18790' => 'aar', 'Aa31LG7G5520' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1359' => 'aag', 'Actinidia10680' => 'ach', 'Actinidia11536' => 'ach', 'Actinidia13317' => 'ach', 'Actinidia14664' => 'ach', 'Actinidia15187' => 'ach', 'Actinidia15733' => 'ach', 'Actinidia19952' => 'ach', 'Actinidia29054' => 'ach', 'Actinidia29293' => 'ach', 'Actinidia29496' => 'ach', 'Actinidia31230' => 'ach', 'Ah.05g169210' => 'amhyb', 'Ah.06g191790' => 'amhyb', 'Ah.08g209820' => 'amhyb', 'Ah.10g035120' => 'amhyb', 'Ah.15g090320' => 'amhyb', 'Ah.16g105350' => 'amhyb', 'AL1G34480' => 'aly', 'AL2G37130' => 'aly', 'AL3G19790' => 'aly', 'AL4G35630' => 'aly', 'AL6G10270' => 'aly', 'AL7G18990' => 'aly', 'AL8G21460' => 'aly', 'AL8G40760' => 'aly', 'Aqoxy4G02162' => 'aox', 'Aqoxy5G02301' => 'aox', 'Aqoxy6G00062' => 'aox', 'Aqoxy7G01592' => 'aox', 'Aqoxy7G03830' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1L601T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.46S9P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4AVB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4SL3FM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5BR908' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6U5Y09' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9KTC61' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BP2229' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CKKZ4Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0Q561' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1A46Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4I0EH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6YJME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KD0L7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N0BIWD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX1HSL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1B2DF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QP6ZFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYPE8P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RY9WXU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W3VFTF' => 'arhy', 'AT1G21380' => 'ath', 'AT1G76970' => 'ath', 'AT2G38410' => 'ath', 'AT3G08790' => 'ath', 'AT4G32760' => 'ath', 'AT5G01760' => 'ath', 'AT5G63640' => 'ath', 'ATR0012G012' => 'atr', 'ATR0315G082' => 'atr', 'ATR0681G126' => 'atr', 'ATR0776G024' => 'atr', 'ATR1136G162' => 'atr', 'Atru.chr13.1623' => 'acertr', 'Atru.chr4.1143' => 'acertr', 'Atru.chr6.1747' => 'acertr', 'Atru.chr6.1750' => 'acertr', 'Atru.chr7.2146' => 'acertr', 'Atru.chr8.2362' => 'acertr', 'AUR62004812' => 'cqu', 'AUR62006328' => 'cqu', 'AUR62007680' => 'cqu', 'AUR62009313' => 'cqu', 'AUR62013458' => 'cqu', 'AUR62026366' => 'cqu', 'AUR62029666' => 'cqu', 'AUR62036031' => 'cqu', 'AUR62041726' => 'cqu', 'AUR62043616' => 'cqu', 'BcaB01g06119' => 'bca', 'BcaB01g06252' => 'bca', 'BcaB02g09191' => 'bca', 'BcaB02g09742' => 'bca', 'BcaB03g12762' => 'bca', 'BcaB03g12818' => 'bca', 'BcaB03g14269' => 'bca', 'BcaB07g29696' => 'bca', 'BcaB07g32126' => 'bca', 'BcaC01g02618' => 'bca', 'BcaC02g11987' => 'bca', 'BcaC03g18216' => 'bca', 'BcaC05g26045' => 'bca', 'BcaC06g34865' => 'bca', 'BcaC07g39094' => 'bca', 'BcaC08g45488' => 'bca', 'BcaC08g47200' => 'bca', 'BcaC09g47993' => 'bca', 'BcaC09g47994' => 'bca', 'BcaC09g48035' => 'bca', 'BcaC09g48036' => 'bca', 'BcaC09g52070' => 'bca', 'BcaNung03602' => 'bca', 'BcaNung04525' => 'bca', 'BNapus_Darmor_BZH_scaffold_167p00160' => 'bna', 'BolC1t00612H' => 'bol', 'BolC1t05489H' => 'bol', 'BolC2t12357H' => 'bol', 'BolC3t12603H' => 'bol', 'BolC3t18534H' => 'bol', 'BolC3t21000H' => 'bol', 'BolC4t22526H' => 'bol', 'BolC5t30720H' => 'bol', 'BolC6t38287H' => 'bol', 'BolC6t40141H' => 'bol', 'BolC7t42774H' => 'bol', 'BolC7t46378H' => 'bol', 'BolC8t49717H' => 'bol', 'BolC9t53860H' => 'bol', 'BraA01t00527Z' => 'bra', 'BraA01t04330Z' => 'bra', 'BraA02t09213Z' => 'bra', 'BraA03t09399Z' => 'bra', 'BraA03t15199Z' => 'bra', 'BraA05t19733Z' => 'bra', 'BraA06t24840Z' => 'bra', 'BraA06t25975Z' => 'bra', 'BraA07t29255Z' => 'bra', 'BraA07t30459Z' => 'bra', 'BraA07t31782Z' => 'bra', 'BraA08t33744Z' => 'bra', 'BraA08t34832Z' => 'bra', 'C01p06140' => 'bna', 'C02p62850' => 'bna', 'C03p00250' => 'bna', 'C03p62800' => 'bna', 'C03p87040' => 'bna', 'C04p09170' => 'bna', 'C05p20270' => 'bna', 'C06p31570' => 'bna', 'C06p51200' => 'bna', 'C07p22220' => 'bna', 'C07p59330' => 'bna', 'C08p20780' => 'bna', 'C09p09480' => 'bna', 'CAN.G1189.2' => 'can', 'CAN.G133.2' => 'can', 'CAN.G21.35' => 'can', 'CAN.G309.85' => 'can', 'CAN.G46.21' => 'can', 'CAN.G46.24' => 'can', 'CAN.G516.4' => 'can', 'CANSAT21G2019' => 'cansat', 'CANSAT25G0045' => 'cansat', 'CANSAT35G1990' => 'cansat', 'CANSAT54G1235' => 'cansat', 'CANSAT56G4272' => 'cansat', 'CARHR021770' => 'chi', 'CARHR070480' => 'chi', 'CARHR083110' => 'chi', 'CARHR133030' => 'chi', 'CARHR212120' => 'chi', 'CARHR240750' => 'chi', 'CARHR277520' => 'chi', 'Carub.0001s2079' => 'cru', 'Carub.0002s2387' => 'cru', 'Carub.0003s0792' => 'cru', 'Carub.0004s2037' => 'cru', 'Carub.0006s0007' => 'cru', 'Carub.0007s0773' => 'cru', 'Carub.0008s2440' => 'cru', 'Ca_07727_v3' => 'car', 'Ca_07737_v3' => 'car', 'Ca_12733_v3' => 'car', 'Ca_12739_v3' => 'car', 'Ca_15612_v3' => 'car', 'Ca_16627_v3' => 'car', 'Ca_17029_v3' => 'car', 'Ca_17593_v3' => 'car', 'Ca_29645_v3' => 'car', 'CBR_g51922' => 'cbr', 'CBR_g8652' => 'cbr', 'Cc00_g05570' => 'ccan', 'Cc00_g06030' => 'ccan', 'Cc00_g30090' => 'ccan', 'Cc06_g00600' => 'ccan', 'Cc06_g00610' => 'ccan', 'Cc08_g09130' => 'ccan', 'Cc10_g13410' => 'ccan', 'CDE02G4071' => 'cde', 'CDE04G2165' => 'cde', 'CDE04G3101' => 'cde', 'CDE04G3139' => 'cde', 'CDE06G0363' => 'cde', 'CDE08G0734' => 'cde', 'CDE08G0987' => 'cde', 'CDE12G0927' => 'cde', 'Cfa002240' => 'cfa', 'Cfa002241' => 'cfa', 'Cfa017081' => 'cfa', 'Cfa018401' => 'cfa', 'Cfa022136' => 'cfa', 'Cfa025321' => 'cfa', 'Ciclev10000887m.g' => 'ccl', 'Ciclev10007656m.g' => 'ccl', 'Ciclev10011304m.g' => 'ccl', 'Ciclev10027331m.g' => 'ccl', 'CiPaw.03G253300' => 'cil', 'CiPaw.07G206100' => 'cil', 'CiPaw.08G024300' => 'cil', 'CiPaw.09G217100' => 'cil', 'CiPaw.10G163100' => 'cil', 'CiPaw.15G024700' => 'cil', 'ClCG04G002930' => 'cla', 'ClCG04G002940' => 'cla', 'ClCG08G006240' => 'cla', 'ClCG08G012340' => 'cla', 'ClCG10G022580' => 'cla', 'ClCG11G008480' => 'cla', 'ClCG11G015240' => 'cla', 'COL.COLO4_00181' => 'col', 'COL.COLO4_02721' => 'col', 'COL.COLO4_08632' => 'col', 'COL.COLO4_12631' => 'col', 'COL.COLO4_14509' => 'col', 'COL.COLO4_14591' => 'col', 'COL.COLO4_18150' => 'col', 'COL.COLO4_18683' => 'col', 'Cpa.g.sc138.17' => 'cpa', 'Cpa.g.sc26.64' => 'cpa', 'Cpa.g.sc26.65' => 'cpa', 'Cpa.g.sc78.69' => 'cpa', 'Cpa.g.sc78.70' => 'cpa', 'Cpa.g.sc78.72' => 'cpa', 'Cpa.g.sc86.12' => 'cpa', 'Cre06.g292000' => 'cre', 'Cre13.g585100' => 'cre', 'CsaV3_2G031010' => 'csa', 'CsaV3_3G033250' => 'csa', 'CsaV3_3G048660' => 'csa', 'CsaV3_4G027580' => 'csa', 'CsaV3_6G031210' => 'csa', 'CsaV3_7G022130' => 'csa', 'CSS0001201' => 'camsi', 'CSS0007423' => 'camsi', 'CSS0010560' => 'camsi', 'CSS0010689' => 'camsi', 'CSS0015302' => 'camsi', 'CSS0018427' => 'camsi', 'CSS0031519' => 'camsi', 'CSS0032103' => 'camsi', 'CSS0042884' => 'camsi', 'DCAR_001124' => 'dca', 'DCAR_002174' => 'dca', 'DCAR_003115' => 'dca', 'DCAR_003116' => 'dca', 'DCAR_007809' => 'dca', 'DCAR_014395' => 'dca', 'DCAR_015352' => 'dca', 'DCAR_016986' => 'dca', 'DCAR_018658' => 'dca', 'DCAR_031490' => 'dca', 'Dinv14239' => 'din', 'Dinv16806' => 'din', 'Dinv16808' => 'din', 'Dinv25772' => 'din', 'Dinv30264' => 'din', 'Dinv35440' => 'din', 'Dinv41152' => 'din', 'Duzib093G2185' => 'dzi', 'Duzib114G0308' => 'dzi', 'Duzib116G0772' => 'dzi', 'Duzib147G1701' => 'dzi', 'Duzib150G0276' => 'dzi', 'Duzib151G0868' => 'dzi', 'Duzib168G2268' => 'dzi', 'Duzib187G0688' => 'dzi', 'Duzib187G1276' => 'dzi', 'Duzib212G0925' => 'dzi', 'Duzib268G0868' => 'dzi', 'ECA232G4703' => 'eca', 'ECA233G3707' => 'eca', 'ECA236G5119' => 'eca', 'ECA246G1785' => 'eca', 'ECA246G5261' => 'eca', 'ECA247G1684' => 'eca', 'ECA248G1495' => 'eca', 'ECA248G2098' => 'eca', 'ECA248G2544' => 'eca', 'EL10Ac1g01403' => 'bvu', 'EL10Ac2g04055' => 'bvu', 'EL10Ac4g08977' => 'bvu', 'EL10Ac7g17035' => 'bvu', 'Eucgr.A00647' => 'egr', 'Eucgr.C01589' => 'egr', 'Eucgr.C01599' => 'egr', 'Eucgr.E03504' => 'egr', 'Eucgr.E03507' => 'egr', 'Eucgr.E03510' => 'egr', 'Eucgr.F02773' => 'egr', 'Eucgr.F04281' => 'egr', 'Eucgr.F04283' => 'egr', 'Eucgr.H05049' => 'egr', 'Eucgr.I00010' => 'egr', 'Eucgr.L00736' => 'egr', 'Eucgr.L01816' => 'egr', 'FAN02G1479' => 'fan', 'FAN05G1964' => 'fan', 'FAN05G2019' => 'fan', 'FAN09G4360' => 'fan', 'FAN14G0402' => 'fan', 'FAN15G0712' => 'fan', 'FAN15G3057' => 'fan', 'FAN19G2143' => 'fan', 'FAN20G0059' => 'fan', 'FAN20G2935' => 'fan', 'FAN23G1538' => 'fan', 'FAN24G2496' => 'fan', 'FAN26G2166' => 'fan', 'FAN27G2360' => 'fan', 'FAN27G3305' => 'fan', 'FAN28G1542' => 'fan', 'FvH4_1g25460' => 'fve', 'FvH4_2g15400' => 'fve', 'FvH4_2g35970' => 'fve', 'FvH4_6g10390' => 'fve', 'Glyma.04G081100' => 'gma', 'Glyma.04G193151' => 'gma', 'Glyma.04G205650' => 'gma', 'Glyma.04G205800' => 'gma', 'Glyma.04G243600' => 'gma', 'Glyma.05G197500' => 'gma', 'Glyma.06G082800' => 'gma', 'Glyma.06G119700' => 'gma', 'Glyma.06G159800' => 'gma', 'Glyma.08G004900' => 'gma', 'Glyma.09G278600' => 'gma', 'Glyma.11G010100' => 'gma', 'Glyma.13G036000' => 'gma', 'Glyma.14G142900' => 'gma', 'Glyma.14G143000' => 'gma', 'Glyma.17G191000' => 'gma', 'Glyma.18G210100' => 'gma', 'Gohir.A02G005500' => 'ghi', 'Gohir.A05G047700' => 'ghi', 'Gohir.A05G240000' => 'ghi', 'Gohir.A05G269400' => 'ghi', 'Gohir.A06G094800' => 'ghi', 'Gohir.A07G023300' => 'ghi', 'Gohir.A08G250533' => 'ghi', 'Gohir.A08G250600' => 'ghi', 'Gohir.A10G147500' => 'ghi', 'Gohir.A11G059000' => 'ghi', 'Gohir.D02G006000' => 'ghi', 'Gohir.D05G050000' => 'ghi', 'Gohir.D05G241300' => 'ghi', 'Gohir.D05G271400' => 'ghi', 'Gohir.D06G094300' => 'ghi', 'Gohir.D07G026900' => 'ghi', 'Gohir.D08G272100' => 'ghi', 'Gohir.D10G118600' => 'ghi', 'Gohir.D11G063200' => 'ghi', 'Gorai.001G027900' => 'gra', 'Gorai.004G290500' => 'gra', 'Gorai.005G006700' => 'gra', 'Gorai.007G068300' => 'gra', 'Gorai.009G051300' => 'gra', 'Gorai.009G250700' => 'gra', 'Gorai.009G284400' => 'gra', 'Gorai.009G333300' => 'gra', 'Gorai.010G108800' => 'gra', 'Gorai.011G130400' => 'gra', 'GSVIVG01008766001' => 'vvi', 'GSVIVG01022425001' => 'vvi', 'GSVIVG01030233001' => 'vvi', 'GSVIVG01035657001' => 'vvi', 'HanXRQChr01g0017131' => 'han', 'HanXRQChr01g0029611' => 'han', 'HanXRQChr02g0041861' => 'han', 'HanXRQChr04g0105881' => 'han', 'HanXRQChr11g0351721' => 'han', 'HanXRQChr14g0449521' => 'han', 'HanXRQChr15g0463491' => 'han', 'HanXRQChr16g0510811' => 'han', 'Haze_17665' => 'cav', 'Haze_21116' => 'cav', 'Haze_21869' => 'cav', 'Haze_25421' => 'cav', 'Hma1.2p1_0057F.1_g032110' => 'hma', 'Hma1.2p1_0422F.1_g150160' => 'hma', 'Hma1.2p1_0642F.1_g194320' => 'hma', 'Hma1.2p1_1125F.1_g259590' => 'hma', 'Hma1.2p1_1349F.1_g277320' => 'hma', 'Hma1.2p1_2315F.1_g319690' => 'hma', 'Hma1.2p1_2315F.1_g319700' => 'hma', 'Hma1.2p1_2315F.1_g319710' => 'hma', 'Hma1.2p1_2864F.1_g329590' => 'hma', 'Hma1.2p1_3137F.1_g333035' => 'hma', 'Hma1.2p1_3137F.1_g333040' => 'hma', 'HPP92_000519' => 'vpl', 'HPP92_002042' => 'vpl', 'HPP92_004460' => 'vpl', 'HPP92_008149' => 'vpl', 'HPP92_011993' => 'vpl', 'HPP92_017925' => 'vpl', 'HPP92_018095' => 'vpl', 'HPP92_019068' => 'vpl', 'HPP92_019077' => 'vpl', 'HPP92_019078' => 'vpl', 'HPP92_019079' => 'vpl', 'Hund03411' => 'sun', 'Hund06896' => 'sun', 'Hund17366' => 'sun', 'Hund19533' => 'sun', 'Hund19813' => 'sun', 'Hund26766' => 'sun', 'Lalb_Chr01g0023581' => 'lal', 'Lalb_Chr03g0043671' => 'lal', 'Lalb_Chr07g0184041' => 'lal', 'Lalb_Chr08g0237771' => 'lal', 'Lalb_Chr08g0240941' => 'lal', 'Lalb_Chr08g0243211' => 'lal', 'Lalb_Chr11g0064421' => 'lal', 'Lalb_Chr11g0066281' => 'lal', 'Lalb_Chr12g0202811' => 'lal', 'Lalb_Chr23g0269521' => 'lal', 'Lalb_Chr23g0271231' => 'lal', 'Lj1g0000410' => 'lja', 'Lj1g0001142' => 'lja', 'Lj1g0011246' => 'lja', 'Lj1g0020785' => 'lja', 'Lj1g0021643' => 'lja', 'Lj2A423G53' => 'lonja', 'Lj2A617G13' => 'lonja', 'Lj2A617T14' => 'lonja', 'Lj2C63T17' => 'lonja', 'Lj3A943T27' => 'lonja', 'Lj4C686T0' => 'lonja', 'Lj4g0009476' => 'lja', 'Lj7A356G43' => 'lonja', 'Lj7C705T16' => 'lonja', 'Lj8A591T17' => 'lonja', 'Lj8C599T3' => 'lonja', 'Lsat_1_v5_gn_1_49720' => 'lsa', 'Lsat_1_v5_gn_1_77960' => 'lsa', 'Lsat_1_v5_gn_1_9041' => 'lsa', 'Lsat_1_v5_gn_5_33420' => 'lsa', 'Lsat_1_v5_gn_6_104720' => 'lsa', 'Lsat_1_v5_gn_8_118661' => 'lsa', 'Lsat_1_v5_gn_9_38121' => 'lsa', 'Manes.02G172100' => 'mes', 'Manes.03G061600' => 'mes', 'Manes.08G174300' => 'mes', 'Manes.09G114500' => 'mes', 'Manes.13G078500' => 'mes', 'Manes.16G071200' => 'mes', 'Manes.18G084535' => 'mes', 'Mapoly0027s0043' => 'mpo', 'Mapoly0065s0071' => 'mpo', 'MBI01_g30750_MAGBIO' => 'mbi', 'MBI03_g11327_MAGBIO' => 'mbi', 'MBI03_g20842_MAGBIO' => 'mbi', 'MBI04_g19175_MAGBIO' => 'mbi', 'MBI06_g20963_MAGBIO' => 'mbi', 'MBI06_g27456_MAGBIO' => 'mbi', 'MBI15_g10508_MAGBIO' => 'mbi', 'MD04G1169500' => 'mdo', 'MD05G1008800' => 'mdo', 'MD08G1116900' => 'mdo', 'MD10G1007100' => 'mdo', 'MD10G1007700' => 'mdo', 'MD12G1183500' => 'mdo', 'MD15G1096400' => 'mdo', 'MD15G1138500' => 'mdo', 'Medtr1g026840' => 'mtr', 'Medtr3g088805' => 'mtr', 'Medtr3g097280' => 'mtr', 'Medtr3g110108' => 'mtr', 'Medtr7g072310' => 'mtr', 'Medtr8g095280' => 'mtr', 'MELO3C003249.2' => 'cme', 'MELO3C003455.2' => 'cme', 'MELO3C008434.2' => 'cme', 'MELO3C009118.2' => 'cme', 'MELO3C011154.2' => 'cme', 'MELO3C013243.2' => 'cme', 'Migut.A00227' => 'egut', 'Migut.C01086' => 'egut', 'Migut.E01515' => 'egut', 'Migut.H00793' => 'egut', 'Migut.J00074' => 'egut', 'Migut.O00293' => 'egut', 'MSTRG.1395' => 'ama', 'MSTRG.14020' => 'ama', 'MSTRG.23503' => 'ama', 'MSTRG.25347' => 'ama', 'MSTRG.5524' => 'ama', 'Nitab4.5_0000047g0020' => 'nta', 'Nitab4.5_0000052g0230' => 'nta', 'Nitab4.5_0000334g0070' => 'nta', 'Nitab4.5_0000664g0270' => 'nta', 'Nitab4.5_0000701g0010' => 'nta', 'Nitab4.5_0000701g0020' => 'nta', 'Nitab4.5_0000847g0100' => 'nta', 'Nitab4.5_0001567g0090' => 'nta', 'Nitab4.5_0003764g0030' => 'nta', 'Nitab4.5_0003764g0040' => 'nta', 'Nitab4.5_0004394g0030' => 'nta', 'Nitab4.5_0004701g0020' => 'nta', 'Nitab4.5_0004701g0040' => 'nta', 'Nitab4.5_0005839g0010' => 'nta', 'Nn2g11066' => 'nnu', 'Nn2g11684' => 'nnu', 'Nn2g13303' => 'nnu', 'Nn3g18084' => 'nnu', 'Nn5g27539' => 'nnu', 'Nn5g28497' => 'nnu', 'Oeu001549.1' => 'oeu', 'Oeu008292.1' => 'oeu', 'Oeu008293.1' => 'oeu', 'Oeu015298.1' => 'oeu', 'Oeu017624.2' => 'oeu', 'Oeu037530.1' => 'oeu', 'Oeu045976.3' => 'oeu', 'Oeu047151.1' => 'oeu', 'Oeu049332.1' => 'oeu', 'Oeu050086.1' => 'oeu', 'Oeu057980.1' => 'oeu', 'Oeu063202.1' => 'oeu', 'Oeu064151.1' => 'oeu', 'Os01g0229200' => 'osa', 'Os01g0825700' => 'osa', 'Os02g0273700' => 'osa', 'Os05g0339000' => 'osa', 'Os05g0475300' => 'osa', 'Os06g0332400' => 'osa', 'Os08g0109000' => 'osa', 'Os11g0199700' => 'osa', 'Peaxi162Scf00066g00107' => 'pax', 'Peaxi162Scf00090g02114' => 'pax', 'Peaxi162Scf00090g02115' => 'pax', 'Peaxi162Scf00276g00311' => 'pax', 'Peaxi162Scf00744g00017' => 'pax', 'Peaxi162Scf01184g00148' => 'pax', 'Peaxi162Scf01578g00018' => 'pax', 'PGR004G2390' => 'pgr', 'PGR031G2109' => 'pgr', 'PGR031G2136' => 'pgr', 'PGR042G3053' => 'pgr', 'PGR044G0329' => 'pgr', 'PGR102G0334' => 'pgr', 'PGSC0003DMG400032056' => 'stu', 'PGSC0003DMG401017032' => 'stu', 'Phvul.001G063400' => 'pvu', 'Phvul.001G065700' => 'pvu', 'Phvul.002G278000' => 'pvu', 'Phvul.008G087901' => 'pvu', 'Phvul.008G088200' => 'pvu', 'Phvul.009G107100' => 'pvu', 'Phvul.009G132300' => 'pvu', 'Phvul.009G157450' => 'pvu', 'Phvul.009G157500' => 'pvu', 'Potri.002G075500' => 'ptr', 'Potri.004G138600' => 'ptr', 'Potri.005G184900' => 'ptr', 'Potri.006G106500' => 'ptr', 'Potri.006G241000' => 'ptr', 'Potri.016G131900' => 'ptr', 'Potri.018G039100' => 'ptr', 'Potri.T005401' => 'ptr', 'Potri.T010700' => 'ptr', 'Pp3c1_21160' => 'ppa', 'Pp3c20_7060' => 'ppa', 'Pp3c23_19630' => 'ppa', 'Pp3c2_16300' => 'ppa', 'PRCOL_00005131' => 'pco', 'Prupe.1G451300' => 'ppe', 'Prupe.4G281700' => 'ppe', 'Prupe.6G288000' => 'ppe', 'Prupe.8G010900' => 'ppe', 'Psat0s1315g0040' => 'psa', 'Psat0s1482g0040' => 'psa', 'Psat3g122520' => 'psa', 'Psat4g127160' => 'psa', 'Psat5g022600' => 'psa', 'Psat5g057600' => 'psa', 'Psat5g083920' => 'psa', 'Psat7g042080' => 'psa', 'PSO017G0335' => 'pso', 'PSO017G0649' => 'pso', 'PSO017G5441' => 'pso', 'PSO170G3901' => 'pso', 'PSO170G3985' => 'pso', 'PSO170G6773' => 'pso', 'PSO210G0796' => 'pso', 'PSO210G2176' => 'pso', 'PSO339G0959' => 'pso', 'PSO384G2217' => 'pso', 'PSO528G0047' => 'pso', 'PSO566G0251' => 'pso', 'PSO782G4033' => 'pso', 'PSO782G5643' => 'pso', 'QL07p033292' => 'qlo', 'QL09p029787' => 'qlo', 'QL10p038923' => 'qlo', 'QL12p029556' => 'qlo', 'QL12p029562' => 'qlo', 'RcHm_v2.0_Chr2g0123581' => 'rch', 'RcHm_v2.0_Chr3g0461281' => 'rch', 'RcHm_v2.0_Chr6g0278141' => 'rch', 'RcHm_v2.0_Chr6g0305901' => 'rch', 'Rhsim02G0181000' => 'rsi', 'Rhsim05G0228000' => 'rsi', 'Rhsim05G0228100' => 'rsi', 'Rhsim10G0152800' => 'rsi', 'Rhsim11G0074300' => 'rsi', 'Sabra02G0059000' => 'sbr', 'Sabra02G0059200' => 'sbr', 'Sabra04G0150000' => 'sbr', 'Sabra05G0141400' => 'sbr', 'Sabra06G0082900' => 'sbr', 'Sabra06G0188400' => 'sbr', 'Sabra18G0039200' => 'sbr', 'Sabra19G0003000' => 'sbr', 'Sabra19G0009200' => 'sbr', 'SalBow1G0030' => 'sbo', 'SalBow2G1558' => 'sbo', 'SalBow4G1676' => 'sbo', 'SalBow7G0790' => 'sbo', 'Sc02g0000730' => 'sci', 'Sc02g0004630' => 'sci', 'Sc02g0004640' => 'sci', 'Sc06g0009780' => 'sci', 'Sc09g0009210' => 'sci', 'Sc20g0000740' => 'sci', 'Sed0000983' => 'sed', 'Sed0002490' => 'sed', 'Sed0008400' => 'sed', 'Sed0008487' => 'sed', 'Sed0011904' => 'sed', 'Sed0013582' => 'sed', 'Sed0016269' => 'sed', 'Sed0018023' => 'sed', 'Sed0027395' => 'sed', 'Sed0027696' => 'sed', 'SEGI_20957' => 'sgi', 'SEGI_33689' => 'sgi', 'SEGI_35221' => 'sgi', 'SEGI_40432' => 'sgi', 'SGA_v2.0_scaffold163G38082' => 'sas', 'SGA_v2.0_scaffold185G40044' => 'sas', 'SGA_v2.0_scaffold211G42141' => 'sas', 'SGA_v2.0_scaffold243G44292' => 'sas', 'SGA_v2.0_scaffold24G10396' => 'sas', 'SGA_v2.0_scaffold48G17916' => 'sas', 'SGA_v2.0_scaffold85G26661' => 'sas', 'SHI09240' => 'shi', 'SHI23727' => 'shi', 'SHI23728' => 'shi', 'SMO118G0430' => 'smo', 'SMO167G0011' => 'smo', 'SMO347G0540' => 'smo', 'SMO356G0495' => 'smo', 'SMO365G0009' => 'smo', 'Solyc04g063280.3' => 'sly', 'Solyc08g068370.3' => 'sly', 'Solyc09g014790.4' => 'sly', 'Solyc10g044750.3' => 'sly', 'Solyc11g005460.2' => 'sly', 'Solyc11g071270.2' => 'sly', 'Sopen04g026200' => 'spe', 'Sopen08g022210' => 'spe', 'Sopen09g007670' => 'spe', 'Sopen10g013420' => 'spe', 'Sopen11g001470' => 'spe', 'Sopen11g028950' => 'spe', 'Sp1g18930' => 'spa', 'Sp2g26730' => 'spa', 'Sp3g07210' => 'spa', 'Sp4g20730' => 'spa', 'Sp5g32130' => 'spa', 'Sp6g41020' => 'spa', 'Sp7g30520' => 'spa', 'TAR369G0494' => 'tar', 'TAR381G1086' => 'tar', 'TAR381G1504' => 'tar', 'TAR383G0445' => 'tar', 'TAR623G1336' => 'tar', 'TAR623G1504' => 'tar', 'TAR624G1191' => 'tar', 'TAR625G0671' => 'tar', 'TAR626G0846' => 'tar', 'TAR636G3538' => 'tar', 'THA.LOC104800333' => 'tha', 'THA.LOC104803437' => 'tha', 'THA.LOC104803809' => 'tha', 'THA.LOC104812054' => 'tha', 'THA.LOC104813697' => 'tha', 'THA.LOC104815057' => 'tha', 'THA.LOC104818406' => 'tha', 'THA.LOC104823311' => 'tha', 'THA.LOC104823363' => 'tha', 'THA.LOC104827065' => 'tha', 'Thecc.01G237300' => 'tca', 'Thecc.04G156900' => 'tca', 'Thecc.08G137000' => 'tca', 'Thecc.09G041300' => 'tca', 'Thhalv10004212m.g' => 'esa', 'Thhalv10007405m.g' => 'esa', 'Thhalv10015861m.g' => 'esa', 'Thhalv10016346m.g' => 'esa', 'Thhalv10019577m.g' => 'esa', 'Thhalv10022036m.g' => 'esa', 'Thhalv10024602m.g' => 'esa', 'TPR.G12966' => 'tpr', 'TPR.G1343' => 'tpr', 'TPR.G20914' => 'tpr', 'TPR.G28691' => 'tpr', 'TPR.G35287' => 'tpr', 'TPR.G6341' => 'tpr', 'TWI32G0640' => 'twi', 'TWI32G1119' => 'twi', 'TWI34G1039' => 'twi', 'TWI34G1595' => 'twi', 'TWI63G0783' => 'twi', 'TWI74G1268' => 'twi', 'TWI75G1559' => 'twi', 'TWI79G1714' => 'twi', 'unitig_0.g2108' => 'ugi', 'unitig_0.g2109' => 'ugi', 'unitig_0.g2804' => 'ugi', 'unitig_21.g20185' => 'ugi', 'unitig_26.g9908' => 'ugi', 'unitig_27.g24877' => 'ugi', 'unitig_46.g18197' => 'ugi', 'unitig_736.g22551' => 'ugi', 'unitig_747.g21867' => 'ugi', 'unitig_749.g13927' => 'ugi', 'unitig_899.g14498' => 'ugi', 'vmacro00874' => 'vma', 'vmacro11073' => 'vma', 'vmacro12734' => 'vma', 'vmacro20343' => 'vma', 'vmacro20345' => 'vma', 'VMungo0251G0210' => 'vmu', 'VMungo0647G0723' => 'vmu', 'VMungo0647G1677' => 'vmu', 'VMungo0647G2303' => 'vmu', 'VMungo1309G0816' => 'vmu', 'VMungo1309G2017' => 'vmu', 'VMungo1309G2780' => 'vmu', 'VMungo1383G0681' => 'vmu', 'VMungo1383G0953' => 'vmu', 'VMungo1383G3141' => 'vmu', 'Zm00001eb112580' => 'zma', 'Zm00001eb119320' => 'zma', 'Zm00001eb149330' => 'zma', 'Zm00001eb168920' => 'zma', 'Zm00001eb174210' => 'zma', 'Zm00001eb237510' => 'zma', 'Zm00001eb260360' => 'zma', 'Zm00001eb286660' => 'zma', 'Zm00001eb286670' => 'zma', 'Zm00001eb290360' => 'zma', 'Zm00001eb339240' => 'zma', 'Zm00001eb382580' => 'zma' ) $gf_id = 'HOM05D000744' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000744' ) $data_identifier = 'HOM05D000744' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 11, 'amhyb' => (int) 6, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 7, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 10, 'bca' => (int) 24, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 9, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 11, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 13, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 11, 'vpl' => (int) 11, 'sun' => (int) 6, 'lal' => (int) 11, 'lja' => (int) 6, 'lonja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 2, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 10, 'sgi' => (int) 4, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 10, 'tca' => (int) 4, 'esa' => (int) 7, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 11, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb382580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1